Melatonin pharmacophoric motifs in the anancomeric spiranic oxindole-cycloalkane scaffold: Theoretical and 1H NMR conformational analysis

Martha S. Morales-Ríos, Daphne E. González-Juárez, Gelacio Martínez-Gudiño, Nury Pérez-Hernández, Luz María Del Razo, Humberto L. Mendoza-Figueroa, J. Benjamín García-Vázquez

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Abstract

N-[2′-oxospiro(cycloalkane-1,3′-indoline)methyl]acetamides (1a/b-4a/b), analogues conformationally restricted of neurohormone melatonin (MLT), were constructed through pharmacophoric ethylacetamido side chain incorporation into a chiral spiro-ring structure. A facile synthetic route was established to afford the epimeric spirocycloalkane pairs a/b starting from substituted spirocycloalkane nitriles through catalytic hydrogenation in acetic anhydride medium. The conformational profiles of the methylamido side chain were explored by computational methods. The main conformational features represent a balance between geometric restrictions imposed by the spiro-ring structure and the relative configuration of the corresponding stereocenters. The anancomeric structure of the spiranic oxindole-cycloalkane scaffold and the orientation of the amido side chain is discussed considering complete 750 MHz 1H NMR data by applying an iterative full spin analysis (HiFSA), conformational analysis, and single crystal X-ray diffraction. The effect of the conformational restriction, ring size, and stereochemistry on melatoninergic agonist activity was analyzed in terms of pharmacophore-based virtual screening.

Original languageEnglish
Article number127267
JournalJournal of Molecular Structure
Volume1202
DOIs
StatePublished - 15 Feb 2020

Keywords

  • Bis-amides
  • Conformational restriction
  • Iterative H NMR analysis (HiFSA)
  • MEXOQPBTEIZEDZ-CXAGYDPISA-N
  • MEXOQPBTEIZEDZ-SUMWQHHRSA-N
  • Melatonin
  • Pharmacophore modelling
  • Spirooxindoles
  • WXQYDEGDTVANTI-BLLLJJGKSA-N
  • WXQYDEGDTVANTI-MLGOLLRUSA-N

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