Draft Genome of Burkholderia cenocepacia TAtl-371, a Strain from the Burkholderia cepacia Complex Retains Antagonism in Different Carbon and Nitrogen Sources

Fernando Uriel Rojas-Rojas, David Sánchez-López, Erika Yanet Tapia-García, Ivan Arroyo-Herrera, Maskit Maymon, Ethan Humm, Marcel Huntemann, Alicia Clum, Manoj Pillay, Krishnaveni Palaniappan, Neha Varghese, Natalia Mikhailova, Dimitrios Stamatis, T. B.K. Reddy, Natalia Ivanova, Nikos Kyrpides, Tanja Woyke, Nicole Shapiro, Ann M. Hirsch, J. Antonio Ibarra & 1 others Paulina Estrada-de los Santos

Research output: Contribution to journalArticleResearchpeer-review

Abstract

© 2019, Springer Science+Business Media, LLC, part of Springer Nature. Burkholderia cenocepacia TAtl-371 was isolated from the rhizosphere of a tomato plant growing in Atlatlahucan, Morelos, Mexico. This strain exhibited a broad antimicrobial spectrum against bacteria, yeast, and fungi. Here, we report and describe the improved, high-quality permanent draft genome of B. cenocepacia TAtl-371, which was sequenced using a combination of PacBio RS and PacBio RS II sequencing methods. The 7,496,106 bp genome of the TAtl-371 strain is arranged in three scaffolds, contains 6722 protein-coding genes, and 99 RNA only-encoding genes. Genome analysis revealed genes related to biosynthesis of antimicrobials such as non-ribosomal peptides, siderophores, chitinases, and bacteriocins. Moreover, analysis of bacterial growth on different carbon and nitrogen sources shows that the strain retains its antimicrobial ability.
Original languageAmerican English
JournalCurrent Microbiology
DOIs
StatePublished - 1 Jan 2019

Fingerprint

Burkholderia cenocepacia
Burkholderia cepacia complex
Nitrogen
Carbon
Genome
Siderophores
Chitinases
Bacteriocins
Rhizosphere
Lycopersicon esculentum
Mexico
Genes
Fungi
Yeasts
RNA
Bacteria
Peptides
Growth
Proteins

Cite this

Rojas-Rojas, Fernando Uriel ; Sánchez-López, David ; Tapia-García, Erika Yanet ; Arroyo-Herrera, Ivan ; Maymon, Maskit ; Humm, Ethan ; Huntemann, Marcel ; Clum, Alicia ; Pillay, Manoj ; Palaniappan, Krishnaveni ; Varghese, Neha ; Mikhailova, Natalia ; Stamatis, Dimitrios ; Reddy, T. B.K. ; Ivanova, Natalia ; Kyrpides, Nikos ; Woyke, Tanja ; Shapiro, Nicole ; Hirsch, Ann M. ; Ibarra, J. Antonio ; Estrada-de los Santos, Paulina. / Draft Genome of Burkholderia cenocepacia TAtl-371, a Strain from the Burkholderia cepacia Complex Retains Antagonism in Different Carbon and Nitrogen Sources. In: Current Microbiology. 2019.
@article{b121cff8318d415aa5f03733f9685143,
title = "Draft Genome of Burkholderia cenocepacia TAtl-371, a Strain from the Burkholderia cepacia Complex Retains Antagonism in Different Carbon and Nitrogen Sources",
abstract = "{\circledC} 2019, Springer Science+Business Media, LLC, part of Springer Nature. Burkholderia cenocepacia TAtl-371 was isolated from the rhizosphere of a tomato plant growing in Atlatlahucan, Morelos, Mexico. This strain exhibited a broad antimicrobial spectrum against bacteria, yeast, and fungi. Here, we report and describe the improved, high-quality permanent draft genome of B. cenocepacia TAtl-371, which was sequenced using a combination of PacBio RS and PacBio RS II sequencing methods. The 7,496,106 bp genome of the TAtl-371 strain is arranged in three scaffolds, contains 6722 protein-coding genes, and 99 RNA only-encoding genes. Genome analysis revealed genes related to biosynthesis of antimicrobials such as non-ribosomal peptides, siderophores, chitinases, and bacteriocins. Moreover, analysis of bacterial growth on different carbon and nitrogen sources shows that the strain retains its antimicrobial ability.",
author = "Rojas-Rojas, {Fernando Uriel} and David S{\'a}nchez-L{\'o}pez and Tapia-Garc{\'i}a, {Erika Yanet} and Ivan Arroyo-Herrera and Maskit Maymon and Ethan Humm and Marcel Huntemann and Alicia Clum and Manoj Pillay and Krishnaveni Palaniappan and Neha Varghese and Natalia Mikhailova and Dimitrios Stamatis and Reddy, {T. B.K.} and Natalia Ivanova and Nikos Kyrpides and Tanja Woyke and Nicole Shapiro and Hirsch, {Ann M.} and Ibarra, {J. Antonio} and {Estrada-de los Santos}, Paulina",
year = "2019",
month = "1",
day = "1",
doi = "10.1007/s00284-019-01657-0",
language = "American English",
journal = "Current Microbiology",
issn = "0343-8651",
publisher = "Springer New York",

}

Rojas-Rojas, FU, Sánchez-López, D, Tapia-García, EY, Arroyo-Herrera, I, Maymon, M, Humm, E, Huntemann, M, Clum, A, Pillay, M, Palaniappan, K, Varghese, N, Mikhailova, N, Stamatis, D, Reddy, TBK, Ivanova, N, Kyrpides, N, Woyke, T, Shapiro, N, Hirsch, AM, Ibarra, JA & Estrada-de los Santos, P 2019, 'Draft Genome of Burkholderia cenocepacia TAtl-371, a Strain from the Burkholderia cepacia Complex Retains Antagonism in Different Carbon and Nitrogen Sources', Current Microbiology. https://doi.org/10.1007/s00284-019-01657-0

Draft Genome of Burkholderia cenocepacia TAtl-371, a Strain from the Burkholderia cepacia Complex Retains Antagonism in Different Carbon and Nitrogen Sources. / Rojas-Rojas, Fernando Uriel; Sánchez-López, David; Tapia-García, Erika Yanet; Arroyo-Herrera, Ivan; Maymon, Maskit; Humm, Ethan; Huntemann, Marcel; Clum, Alicia; Pillay, Manoj; Palaniappan, Krishnaveni; Varghese, Neha; Mikhailova, Natalia; Stamatis, Dimitrios; Reddy, T. B.K.; Ivanova, Natalia; Kyrpides, Nikos; Woyke, Tanja; Shapiro, Nicole; Hirsch, Ann M.; Ibarra, J. Antonio; Estrada-de los Santos, Paulina.

In: Current Microbiology, 01.01.2019.

Research output: Contribution to journalArticleResearchpeer-review

TY - JOUR

T1 - Draft Genome of Burkholderia cenocepacia TAtl-371, a Strain from the Burkholderia cepacia Complex Retains Antagonism in Different Carbon and Nitrogen Sources

AU - Rojas-Rojas, Fernando Uriel

AU - Sánchez-López, David

AU - Tapia-García, Erika Yanet

AU - Arroyo-Herrera, Ivan

AU - Maymon, Maskit

AU - Humm, Ethan

AU - Huntemann, Marcel

AU - Clum, Alicia

AU - Pillay, Manoj

AU - Palaniappan, Krishnaveni

AU - Varghese, Neha

AU - Mikhailova, Natalia

AU - Stamatis, Dimitrios

AU - Reddy, T. B.K.

AU - Ivanova, Natalia

AU - Kyrpides, Nikos

AU - Woyke, Tanja

AU - Shapiro, Nicole

AU - Hirsch, Ann M.

AU - Ibarra, J. Antonio

AU - Estrada-de los Santos, Paulina

PY - 2019/1/1

Y1 - 2019/1/1

N2 - © 2019, Springer Science+Business Media, LLC, part of Springer Nature. Burkholderia cenocepacia TAtl-371 was isolated from the rhizosphere of a tomato plant growing in Atlatlahucan, Morelos, Mexico. This strain exhibited a broad antimicrobial spectrum against bacteria, yeast, and fungi. Here, we report and describe the improved, high-quality permanent draft genome of B. cenocepacia TAtl-371, which was sequenced using a combination of PacBio RS and PacBio RS II sequencing methods. The 7,496,106 bp genome of the TAtl-371 strain is arranged in three scaffolds, contains 6722 protein-coding genes, and 99 RNA only-encoding genes. Genome analysis revealed genes related to biosynthesis of antimicrobials such as non-ribosomal peptides, siderophores, chitinases, and bacteriocins. Moreover, analysis of bacterial growth on different carbon and nitrogen sources shows that the strain retains its antimicrobial ability.

AB - © 2019, Springer Science+Business Media, LLC, part of Springer Nature. Burkholderia cenocepacia TAtl-371 was isolated from the rhizosphere of a tomato plant growing in Atlatlahucan, Morelos, Mexico. This strain exhibited a broad antimicrobial spectrum against bacteria, yeast, and fungi. Here, we report and describe the improved, high-quality permanent draft genome of B. cenocepacia TAtl-371, which was sequenced using a combination of PacBio RS and PacBio RS II sequencing methods. The 7,496,106 bp genome of the TAtl-371 strain is arranged in three scaffolds, contains 6722 protein-coding genes, and 99 RNA only-encoding genes. Genome analysis revealed genes related to biosynthesis of antimicrobials such as non-ribosomal peptides, siderophores, chitinases, and bacteriocins. Moreover, analysis of bacterial growth on different carbon and nitrogen sources shows that the strain retains its antimicrobial ability.

UR - https://www.scopus.com/inward/record.uri?partnerID=HzOxMe3b&scp=85062602570&origin=inward

UR - https://www.scopus.com/inward/citedby.uri?partnerID=HzOxMe3b&scp=85062602570&origin=inward

U2 - 10.1007/s00284-019-01657-0

DO - 10.1007/s00284-019-01657-0

M3 - Article

JO - Current Microbiology

JF - Current Microbiology

SN - 0343-8651

ER -