TY - JOUR
T1 - Calculation of All Possible Stoichiometric Coefficients and Theoretical Yields of Microbial Global Reactions
AU - Hernández-Guisao, Rafael Eduardo
AU - Aranda-Barradas, Juan Silvestre
AU - Badillo-Corona, Agustín
AU - García-Peña, Elvia Inés
AU - Salgado-Manjarrez, Edgar
N1 - Publisher Copyright:
© 2022, The Korean Society for Biotechnology and Bioengineering and Springer.
PY - 2022/10
Y1 - 2022/10
N2 - Stoichiometric analysis is a crucial step in biochemical processes because it allows us to find the proportions in which the substrates and products react. A system of algebraic equation is obtained from an elemental balance of the participating substances and determined, overdetermined or underdetermined systems can result depending on the number of substances and elements. Underdetermined systems are the most common ones as there are, generally, more substances than elemental balances. However, such systems have been poorly studied and a straightforward way to establish the solution space has not yet been reported. In this work a novel approach for finding all the possible solutions to such underdetermined systems is reported for the first time. The solutions space is expressed as a set of vectors which are here referred as extreme stoichiometries. To illustrate the general applicability and some uses of the proposed approach, three different fermentation systems are analyzed: growth of Chlamydomonas reinhardtii, a mixed culture for hydrogen production, and the growth of Saccharomyces cerevisiae. It is shown how the full stoichiometric spaces can be calculated for heterotrophy, autotrophy, mixotrophy, growth of mixed cultures in mixed substrates and how the experimental results should be contained in such spaces, what permits a consistency analysis. With the proposed method, it is now possible to estimate the maximum yields for any given microbial growth reaction and to assess the congruence of experimental data, even when the system is underdetermined.
AB - Stoichiometric analysis is a crucial step in biochemical processes because it allows us to find the proportions in which the substrates and products react. A system of algebraic equation is obtained from an elemental balance of the participating substances and determined, overdetermined or underdetermined systems can result depending on the number of substances and elements. Underdetermined systems are the most common ones as there are, generally, more substances than elemental balances. However, such systems have been poorly studied and a straightforward way to establish the solution space has not yet been reported. In this work a novel approach for finding all the possible solutions to such underdetermined systems is reported for the first time. The solutions space is expressed as a set of vectors which are here referred as extreme stoichiometries. To illustrate the general applicability and some uses of the proposed approach, three different fermentation systems are analyzed: growth of Chlamydomonas reinhardtii, a mixed culture for hydrogen production, and the growth of Saccharomyces cerevisiae. It is shown how the full stoichiometric spaces can be calculated for heterotrophy, autotrophy, mixotrophy, growth of mixed cultures in mixed substrates and how the experimental results should be contained in such spaces, what permits a consistency analysis. With the proposed method, it is now possible to estimate the maximum yields for any given microbial growth reaction and to assess the congruence of experimental data, even when the system is underdetermined.
KW - elemental balances
KW - microbial stoichiometry
KW - theoretical yields
UR - http://www.scopus.com/inward/record.url?scp=85140626569&partnerID=8YFLogxK
U2 - 10.1007/s12257-022-0061-5
DO - 10.1007/s12257-022-0061-5
M3 - Artículo
AN - SCOPUS:85140626569
SN - 1226-8372
VL - 27
SP - 771
EP - 783
JO - Biotechnology and Bioprocess Engineering
JF - Biotechnology and Bioprocess Engineering
IS - 5
ER -